Nanotechnology Now

Our NanoNews Digest Sponsors





Heifer International

Wikipedia Affiliate Button


DHgate

Home > Press > New Nanopore Technique Facilitates Faster, Cheaper Genome Analyses

Schematic of a solid state nanopore used for genome analyses (not to scale). The electrostatic potential near an approximately five nanometer-wide, solid-state nanopore attracts negatively-charged, double-stranded DNA molecules into the pore, which electronically detects the molecules as they traverse the pore. (Photo courtesy of Nature Nanotechnology.)
Schematic of a solid state nanopore used for genome analyses (not to scale). The electrostatic potential near an approximately five nanometer-wide, solid-state nanopore attracts negatively-charged, double-stranded DNA molecules into the pore, which electronically detects the molecules as they traverse the pore. (Photo courtesy of Nature Nanotechnology.)

Abstract:
Ultra-fast, low-cost genomic sequencing and profiling may some day accelerate the pace of biological discovery and enable clinicians to quickly and precisely diagnose patients' susceptibility to disease and tolerance of selected drugs. But this scenario may not be realized until engineers find a way to considerably increase the sensitivity of sensors used to detect the DNA molecules that define the human genome.

New Nanopore Technique Facilitates Faster, Cheaper Genome Analyses

Boston, MA | Posted on December 21st, 2009

It's a feat that could be achieved by reducing the number of target DNA molecule copies needed to obtain an accurate read. And that presents a formidable challenge: to produce sufficient copies to decipher the genome using current technology, most scientists still rely on time-consuming, expensive, and error-prone DNA replication tools such as the polymerase chain reaction (PCR).

Now researchers have devised a method that advances the prospects for efficiently analyzing DNA samples without amplification. In a study published in the Dec. 20 online edition of Nature Nanotechnology, Associate Professor Amit Meller (BME, Physics), BME postdoctoral fellow Meni Wanunu, BU physics student Will Morrison and collaborators at New York University and Bar-Ilan University demonstrated a method to tune solid-state nanopores — tiny, nearly cylindrical, silicon nitride sensors that electronically detect DNA molecules as they pass through the pore — to require far fewer DNA molecules than ever before.

"This study shows that using our method, we can detect a much smaller amount of DNA than previously published," said Meller. "When people will start to implement genome sequencing or profiling using nanopores, they could use our nanopore capture approach to greatly reduce the number of copies used in those measurements."

Nanopore capture consists of two distinct steps: the arrival of a sample molecule to the pore mouth, and the threading of the end of that molecule into the pore. To significantly increase the rate at which nanopores capture incoming, two nanometer-wide DNA molecules, Meller and his colleagues used salt gradients to alter the electric field in the pore's vicinity. This achieved a funneling effect that directed charged DNA molecules toward the mouth of the pore and boosted the molecules' arrival and threading rates.

By upping the capture rate by a few orders of magnitude and decreasing the volume of the sample receiving chamber, the researchers reduced the number of DNA molecule copies required for nanopore-based detection by a factor of 10,000 — from about one billion sample molecules to 100,000. They also demonstrated that longer DNA molecules (containing tens of thousands of nucleotide base pairs) increased the capture rate even further.

"PCR and other DNA replication technologies limit DNA molecule length," said Meller. "Because our method avoids amplification, it not only reduces the cost, time and error rate of DNA replication techniques, but also enables the analysis of very long strands of DNA."

Funded by the National Institutes of Health and the National Science Foundation, the research team set out to achieve a better understanding of the physical forces that govern the DNA capture process. They arrived at their findings by using high-end transmission electron microscopes (TEM) to fabricate hundreds of nanopores with atomic-scale precision, and testing differently configured salt gradients near the pores.

"We had to perform extensive studies with these nearly atomic-scale pores in order to reveal how the electrostatic potential, which extends at least hundreds of nanometers away from the pore, focuses DNA into and through the pore," said Meller.

To conduct further investigations of unamplified genomes, Meller is now exploring other technologies, including optical detection and force measurements, for reading single DNA molecules as they pass through nanopores.

####

About Boston University
Boston University is one of the leading private research and teaching institutions in the world today, with two primary campuses in the heart of Boston and programs around the world.

For more information, please click here

Copyright © Boston University

If you have a comment, please Contact us.

Issuers of news releases, not 7th Wave, Inc. or Nanotechnology Now, are solely responsible for the accuracy of the content.

Bookmark:
Delicious Digg Newsvine Google Yahoo Reddit Magnoliacom Furl Facebook

Related News Press

News and information

Small but heading for the big time: Nanobiotix half year results for the six months ended 30 June 2015, in line with expectations: Major clinical achievements and corporate developments August 28th, 2015

A new technique to make drugs more soluble August 28th, 2015

Nanocatalysts improve processes for the petrochemical industry August 28th, 2015

Nanolab Technologies LEAPS Forward with High-Performance Analysis Services to the World: Nanolab Orders Advanced Local Electrode Atom Probe (LEAP®) Microscope from CAMECA Unit of AMETEK Materials Analysis Division August 27th, 2015

Govt.-Legislation/Regulation/Funding/Policy

These microscopic fish are 3-D-printed to do more than swim: Researchers demonstrate a novel method to build microscopic robots with complex shapes and functionalities August 26th, 2015

Glitter from silver lights up Alzheimer's dark secrets August 25th, 2015

Southampton scientists find new way to detect ortho-para conversion in water August 25th, 2015

Industrial Nanotech, Inc. Provides Update On Hospital Project, PCAOB Audit, and New Heat Shield™ Line August 24th, 2015

Possible Futures

Sediment dwelling creatures at risk from nanoparticles in common household products August 13th, 2015

Harris & Harris Group Reports Financial Statements as of June 30, 2015, and Announces a Stock Repurchase Program August 10th, 2015

Molecular trick alters rules of attraction for non-magnetic metals August 5th, 2015

Global Carbon Nanotubes Industry 2015: Acute Market Reports August 4th, 2015

Nanomedicine

Small but heading for the big time: Nanobiotix half year results for the six months ended 30 June 2015, in line with expectations: Major clinical achievements and corporate developments August 28th, 2015

A new technique to make drugs more soluble August 28th, 2015

These microscopic fish are 3-D-printed to do more than swim: Researchers demonstrate a novel method to build microscopic robots with complex shapes and functionalities August 26th, 2015

Glitter from silver lights up Alzheimer's dark secrets August 25th, 2015

Sensors

Successful boron-doping of graphene nanoribbon August 27th, 2015

Nanotechnology that will impact the Security & Defense sectors to be discussed at NanoSD2015 conference August 25th, 2015

High Precision, High Stability XYZ Microscope Stages, with Capacitive Feedback August 18th, 2015

Setting ground rules for nanotechnology research: Two new projects set the stage for nanotechnology research to move into Big Data August 18th, 2015

Announcements

Small but heading for the big time: Nanobiotix half year results for the six months ended 30 June 2015, in line with expectations: Major clinical achievements and corporate developments August 28th, 2015

A new technique to make drugs more soluble August 28th, 2015

Nanocatalysts improve processes for the petrochemical industry August 28th, 2015

Nanolab Technologies LEAPS Forward with High-Performance Analysis Services to the World: Nanolab Orders Advanced Local Electrode Atom Probe (LEAP®) Microscope from CAMECA Unit of AMETEK Materials Analysis Division August 27th, 2015

Tools

Nanolab Technologies LEAPS Forward with High-Performance Analysis Services to the World: Nanolab Orders Advanced Local Electrode Atom Probe (LEAP®) Microscope from CAMECA Unit of AMETEK Materials Analysis Division August 27th, 2015

Nanometrics to Participate in the Citi 2015 Global Technology Conference August 26th, 2015

50 Years of Scanning Electron Microscopy from ZEISS: ZEISS celebrates the birth of the first commercial scanning electron microscope in 1965 August 26th, 2015

Announcing Oxford Instruments and School of Physics signing a Memorandum of Understanding August 26th, 2015

Nanobiotechnology

Small but heading for the big time: Nanobiotix half year results for the six months ended 30 June 2015, in line with expectations: Major clinical achievements and corporate developments August 28th, 2015

Nanotechnology that will impact the Security & Defense sectors to be discussed at NanoSD2015 conference August 25th, 2015

Louisiana Tech University researchers discover synthesis of a new nanomaterial: Interdisciplinary team creates biocomposite for first time using physiological conditions August 24th, 2015

How UEA research could help build computers from DNA August 19th, 2015

NanoNews-Digest
The latest news from around the world, FREE



  Premium Products
NanoNews-Custom
Only the news you want to read!
 Learn More
NanoTech-Transfer
University Technology Transfer & Patents
 Learn More
NanoStrategies
Full-service, expert consulting
 Learn More











ASP
Nanotechnology Now Featured Books




NNN

The Hunger Project







Car Brands
Buy website traffic