Nanotechnology Now

Our NanoNews Digest Sponsors

Heifer International

Wikipedia Affiliate Button

Home > Press > New Nanopore Technique Facilitates Faster, Cheaper Genome Analyses

Schematic of a solid state nanopore used for genome analyses (not to scale). The electrostatic potential near an approximately five nanometer-wide, solid-state nanopore attracts negatively-charged, double-stranded DNA molecules into the pore, which electronically detects the molecules as they traverse the pore. (Photo courtesy of Nature Nanotechnology.)
Schematic of a solid state nanopore used for genome analyses (not to scale). The electrostatic potential near an approximately five nanometer-wide, solid-state nanopore attracts negatively-charged, double-stranded DNA molecules into the pore, which electronically detects the molecules as they traverse the pore. (Photo courtesy of Nature Nanotechnology.)

Abstract:
Ultra-fast, low-cost genomic sequencing and profiling may some day accelerate the pace of biological discovery and enable clinicians to quickly and precisely diagnose patients' susceptibility to disease and tolerance of selected drugs. But this scenario may not be realized until engineers find a way to considerably increase the sensitivity of sensors used to detect the DNA molecules that define the human genome.

New Nanopore Technique Facilitates Faster, Cheaper Genome Analyses

Boston, MA | Posted on December 21st, 2009

It's a feat that could be achieved by reducing the number of target DNA molecule copies needed to obtain an accurate read. And that presents a formidable challenge: to produce sufficient copies to decipher the genome using current technology, most scientists still rely on time-consuming, expensive, and error-prone DNA replication tools such as the polymerase chain reaction (PCR).

Now researchers have devised a method that advances the prospects for efficiently analyzing DNA samples without amplification. In a study published in the Dec. 20 online edition of Nature Nanotechnology, Associate Professor Amit Meller (BME, Physics), BME postdoctoral fellow Meni Wanunu, BU physics student Will Morrison and collaborators at New York University and Bar-Ilan University demonstrated a method to tune solid-state nanopores — tiny, nearly cylindrical, silicon nitride sensors that electronically detect DNA molecules as they pass through the pore — to require far fewer DNA molecules than ever before.

"This study shows that using our method, we can detect a much smaller amount of DNA than previously published," said Meller. "When people will start to implement genome sequencing or profiling using nanopores, they could use our nanopore capture approach to greatly reduce the number of copies used in those measurements."

Nanopore capture consists of two distinct steps: the arrival of a sample molecule to the pore mouth, and the threading of the end of that molecule into the pore. To significantly increase the rate at which nanopores capture incoming, two nanometer-wide DNA molecules, Meller and his colleagues used salt gradients to alter the electric field in the pore's vicinity. This achieved a funneling effect that directed charged DNA molecules toward the mouth of the pore and boosted the molecules' arrival and threading rates.

By upping the capture rate by a few orders of magnitude and decreasing the volume of the sample receiving chamber, the researchers reduced the number of DNA molecule copies required for nanopore-based detection by a factor of 10,000 — from about one billion sample molecules to 100,000. They also demonstrated that longer DNA molecules (containing tens of thousands of nucleotide base pairs) increased the capture rate even further.

"PCR and other DNA replication technologies limit DNA molecule length," said Meller. "Because our method avoids amplification, it not only reduces the cost, time and error rate of DNA replication techniques, but also enables the analysis of very long strands of DNA."

Funded by the National Institutes of Health and the National Science Foundation, the research team set out to achieve a better understanding of the physical forces that govern the DNA capture process. They arrived at their findings by using high-end transmission electron microscopes (TEM) to fabricate hundreds of nanopores with atomic-scale precision, and testing differently configured salt gradients near the pores.

"We had to perform extensive studies with these nearly atomic-scale pores in order to reveal how the electrostatic potential, which extends at least hundreds of nanometers away from the pore, focuses DNA into and through the pore," said Meller.

To conduct further investigations of unamplified genomes, Meller is now exploring other technologies, including optical detection and force measurements, for reading single DNA molecules as they pass through nanopores.

####

About Boston University
Boston University is one of the leading private research and teaching institutions in the world today, with two primary campuses in the heart of Boston and programs around the world.

For more information, please click here

Copyright © Boston University

If you have a comment, please Contact us.

Issuers of news releases, not 7th Wave, Inc. or Nanotechnology Now, are solely responsible for the accuracy of the content.

Bookmark:
Delicious Digg Newsvine Google Yahoo Reddit Magnoliacom Furl Facebook

Related News Press

News and information

U.S. Air Force Research Lab Taps IBM to Build Brain-Inspired AI Supercomputing System: Equal to 64 million neurons, new neurosynaptic supercomputing system will power complex AI tasks at unprecedented speed and energy efficiency June 23rd, 2017

Rice U. chemists create 3-D printed graphene foam June 22nd, 2017

Tiny bubbles provide tremendous propulsion in new microparticles research-Ben-Gurion U. June 21st, 2017

Enhanced photocatalytic activity by Cu2O nanoparticles integrated H2Ti3O7 nanotubes June 21st, 2017

Govt.-Legislation/Regulation/Funding/Policy

U.S. Air Force Research Lab Taps IBM to Build Brain-Inspired AI Supercomputing System: Equal to 64 million neurons, new neurosynaptic supercomputing system will power complex AI tasks at unprecedented speed and energy efficiency June 23rd, 2017

Rice U. chemists create 3-D printed graphene foam June 22nd, 2017

Tiny bubbles provide tremendous propulsion in new microparticles research-Ben-Gurion U. June 21st, 2017

Enhanced photocatalytic activity by Cu2O nanoparticles integrated H2Ti3O7 nanotubes June 21st, 2017

Possible Futures

U.S. Air Force Research Lab Taps IBM to Build Brain-Inspired AI Supercomputing System: Equal to 64 million neurons, new neurosynaptic supercomputing system will power complex AI tasks at unprecedented speed and energy efficiency June 23rd, 2017

Rice U. chemists create 3-D printed graphene foam June 22nd, 2017

Tiny bubbles provide tremendous propulsion in new microparticles research-Ben-Gurion U. June 21st, 2017

Researchers developed nanoparticle based contrast agent for dual modal imaging of cancer June 21st, 2017

Nanomedicine

Researchers developed nanoparticle based contrast agent for dual modal imaging of cancer June 21st, 2017

Learning with light: New system allows optical “deep learning”: Neural networks could be implemented more quickly using new photonic technology June 12th, 2017

Mussels add muscle to biocompatible fibers: Rice University chemists develop hydrogel strings using compound found in sea creatures June 9th, 2017

Making vessels leaky on demand could aid drug delivery:Rice University scientists use magnets and nanoparticles to open, close gaps in blood vessels June 8th, 2017

Sensors

Leti’s Autonomous-Vehicle System Embedded in Infineon’s AURIX Platform: Leti’s Low-Power, Multi-Sensor System that Transforms Distance Data into Clear Information About the Driving Environment Will Be Demonstrated at ITS Meeting in Strasbourg, June 19-22 June 20th, 2017

New diode features optically controlled capacitance: Israeli researchers have developed a new optically tunable capacitor with embedded metal nanoparticles, creating a metal-insulator-semiconductor diode that is tunable by illumination. June 8th, 2017

Graphene and quantum dots put in motion a CMOS-integrated camera that can see the invisible May 29th, 2017

Ag/ZnO-Nanorods Schottky diodes based UV-PDs are fabricated and tested May 26th, 2017

Announcements

U.S. Air Force Research Lab Taps IBM to Build Brain-Inspired AI Supercomputing System: Equal to 64 million neurons, new neurosynaptic supercomputing system will power complex AI tasks at unprecedented speed and energy efficiency June 23rd, 2017

Rice U. chemists create 3-D printed graphene foam June 22nd, 2017

Tiny bubbles provide tremendous propulsion in new microparticles research-Ben-Gurion U. June 21st, 2017

Enhanced photocatalytic activity by Cu2O nanoparticles integrated H2Ti3O7 nanotubes June 21st, 2017

Tools

Researchers developed nanoparticle based contrast agent for dual modal imaging of cancer June 21st, 2017

Oxford Instruments congratulates Lancaster University for inaugurating the IsoLab, built for studying quantum systems June 20th, 2017

Changing the color of laser light on the femtosecond time scale: How BiCoO3 achieves second harmonic generation June 14th, 2017

Leti Announces Two New Tools for Improving Transportation Comfort, Safety and Efficiency: Wearable Device Measures Stress Responses for Travelers, Pilots and Truck Drivers, While Smartphone App Provides Transit Agencies Broad Data on Transport Modes June 13th, 2017

Nanobiotechnology

Researchers developed nanoparticle based contrast agent for dual modal imaging of cancer June 21st, 2017

Mussels add muscle to biocompatible fibers: Rice University chemists develop hydrogel strings using compound found in sea creatures June 9th, 2017

Making vessels leaky on demand could aid drug delivery:Rice University scientists use magnets and nanoparticles to open, close gaps in blood vessels June 8th, 2017

Nanobiotix's promising data from Phase I/II head and neck cancer trial presented at ASCO June 5th, 2017

NanoNews-Digest
The latest news from around the world, FREE



  Premium Products
NanoNews-Custom
Only the news you want to read!
 Learn More
NanoTech-Transfer
University Technology Transfer & Patents
 Learn More
NanoStrategies
Full-service, expert consulting
 Learn More











ASP
Nanotechnology Now Featured Books




NNN

The Hunger Project