Nanotechnology Now

Our NanoNews Digest Sponsors

Heifer International

Wikipedia Affiliate Button

Home > Press > Taking the 3D Measure of Macromolecules: Berkeley Lab 3D plasmon rulers may offer unprecedented view of critical biological events

The spatial freedom afforded the 3D plasmon ruler’s five nanorods enable it to measure the direction as well as the magnitude of structural changes in a macromolecule sample.
The spatial freedom afforded the 3D plasmon ruler’s five nanorods enable it to measure the direction as well as the magnitude of structural changes in a macromolecule sample.

Abstract:
The world's first three-dimensional plasmon rulers, capable of measuring nanometer-scale spatial changes in macromolecular systems, have been developed by researchers with the U.S. Department of Energy (DOE)'s Lawrence Berkeley National Laboratory (Berkeley Lab), in collaboration with researchers at the University of Stuttgart, Germany. These 3D plasmon rulers could provide scientists with unprecedented details on such critical dynamic events in biology as the interaction of DNA with enzymes, the folding of proteins, the motion of peptides or the vibrations of cell membranes.

In this animation of a 3D plasmon ruler, the plasmonic assembly acts as a transducer to deliver optical information about the structural dynamics of an attached protein.(courtesy of Sven Hein, University of Stuttgart)

Taking the 3D Measure of Macromolecules: Berkeley Lab 3D plasmon rulers may offer unprecedented view of critical biological events

Berkeley, CA | Posted on June 23rd, 2011

"We've demonstrated a 3D plasmon ruler, based on coupled plasmonic oligomers in combination with high-resolution plasmon spectroscopy, that enables us to retrieve the complete spatial configuration of complex macromolecular and biological processes, and to track the dynamic evolution of these processes," says Paul Alivisatos, director of Berkeley Lab and leader of this research.

Alivisatos, who is also the Larry and Diane Bock Professor of Nanotechnology at the University of California (UC), Berkeley, is the senior author of a paper in the journal Science describing this research. The paper is titled "Three-Dimensional Plasmon Rulers." Co-authoring this paper were Laura Na Liu, who at the time the work was done was a member of Alivisatos' research group but is now with Rice University, and Mario Hentschel, Thomas Weiss and Harald Giessen with the University of Stuttgart.

The nanometer scale is where the biological and materials sciences converge. As human machines and devices shrink to the size of biomolecules, scientists need tools by which to precisely measure minute structural changes and distances. To this end, researchers have been developing linear rulers based on the electronic surface waves known as "plasmons," which are generated when light travels through the confined dimensions of noble metal nanoparticles or structures, such as gold or silver.

"Two noble metallic nanoparticles in close proximity will couple with each other through their plasmon resonances to generate a light-scattering spectrum that depends strongly on the distance between the two nanoparticles," Alivisatos says. "This light-scattering effect has been used to create linear plasmon rulers that have been used to measure nanoscale distances in biological cells."

Compared to other types of molecular rulers, which are based on chemical dyes and fluorescence resonance energy transfer (FRET), plasmon rulers neither blink nor photobleach, and also offer exceptional photostability and brightness. However, until now plasmon rulers could only be used to measure distances along one dimension, a limitation that hampers any comprehensive understanding of all the biological and other soft-matter processes that take place in 3D.

"Plasmonic coupling in multiple nanoparticles placed in proximity to each other leads to light scattering spectra that are sensitive to a complete set of 3D motions," says Laura Na Liu, corresponding author of the Science paper. "The key to our success is that we were able to create sharp spectral features in the otherwise broad resonance profile of plasmon-coupled nanostructures by using interactions between quadrupolar and dipolar modes."

Liu explains that typical dipolar plasmon resonances are broad because of radiative damping. As a result, the simple coupling between multiple particles produces indistinct spectra that are not readily converted into distances. She and her co-authors overcame this problem with a 3D ruler constructed from five gold nanorods of individually controlled length and orientation, in which one nanorod is placed perpendicular between two pairs of parallel rod nanorods to form a structure that resembles the letter H.

"The strong coupling between the single nanorod and the two parallel nanorod pairs suppresses radiative damping and allows for the excitation of two sharp quadrupolar resonances that enable high-resolution plasmon spectroscopy," Liu says. "Any conformational change in this 3D plasmonic structure will produce readily observable changes in the optical spectra."

Not only did conformational changes in their 3D plasmon rulers alter light scattering wavelengths, but the spatial freedom afforded its five nanorods also enabled Liu and her colleagues to distinguish the direction as well as the magnitude of structural changes.

"As a proof of concept, we fabricated a series of samples using high-precision electron beam lithography and layer-by-layer stacking nanotechniques, then embedded them with our 3D plasmon rulers in a dielectric medium on a glass substrate," Liu says. "Experimental results were in excellent agreement with the calculated spectra."

Alivisatos, Liu and their collaborators at Stuttgart envision a future in which 3D plasmon rulers would, through biochemical linkers, be attached to a sample macromolecule, for example, to various points along a strand of DNA or RNA, or at different positions on a protein or peptide. The sample macromolecule would then be exposed to light and the optical responses of the 3D plasmon rulers would be measured via dark field microspectroscopy.

"The realization of 3D plasmon rulers using nanoparticles and biochemical linkers is challenging, but 3D nanoparticle assemblies with desired symmetries and configurations have been already been demonstrated," Liu says. "We believe these exciting experimental achievements along with the introduction of our new concept will pave the road toward the realization of 3D plasmon rulers in biological and other soft-matter systems."

This research was supported by grants from the National Institutes of Health NIH Plasmon Rulers Project and the German Ministry of Science.

####

About Berkeley Lab
Lawrence Berkeley National Laboratory addresses the world’s most urgent scientific challenges by advancing sustainable energy, protecting human health, creating new materials, and revealing the origin and fate of the universe. Founded in 1931, Berkeley Lab’s scientific expertise has been recognized with 12 Nobel prizes. The University of California manages Berkeley Lab for the U.S. Department of Energy’s Office of Science. For more, visit www.lbl.gov.

For more information, please click here

Contacts:
Lynn Yarris
(510) 486-5375

Copyright © Berkeley Lab

If you have a comment, please Contact us.

Issuers of news releases, not 7th Wave, Inc. or Nanotechnology Now, are solely responsible for the accuracy of the content.

Bookmark:
Delicious Digg Newsvine Google Yahoo Reddit Magnoliacom Furl Facebook

Related Links

For more information about the research of Paul Alivisatos, visit the Website at:

For more information about the 3D plasmon ruler research at the University of Stuttgart visit the Website at:

Related News Press

Laboratories

Carbon nanotube optics poised to provide pathway to optical-based quantum cryptography and quantum computing: Researchers are exploring enhanced potential of carbon nanotubes for unique applications June 18th, 2018

Evidence for a new property of quantum matter revealed: Electrical dipole activity detected in a quantum material unlike any other tested June 11th, 2018

News and information

Carbon nanotube optics poised to provide pathway to optical-based quantum cryptography and quantum computing: Researchers are exploring enhanced potential of carbon nanotubes for unique applications June 18th, 2018

Camouflaged nanoparticles used to deliver killer protein to cancer June 17th, 2018

Squeezing light at the nanoscale: Ultra-confined light could detect harmful molecules June 17th, 2018

Physicists devise method to reveal how light affects materials: The new method adds to the understanding of the fundamental laws governing the interaction of electrons and light June 15th, 2018

Imaging

New optical sensor can determine if molecules are left or right 'handed' June 13th, 2018

Nano-saturn: Supramolecular complex formation: Anthracene macrocycle and C60 fullerene June 8th, 2018

Scientists use photonic chip to make virtual movies of molecular motion June 6th, 2018

Govt.-Legislation/Regulation/Funding/Policy

Carbon nanotube optics poised to provide pathway to optical-based quantum cryptography and quantum computing: Researchers are exploring enhanced potential of carbon nanotubes for unique applications June 18th, 2018

Camouflaged nanoparticles used to deliver killer protein to cancer June 17th, 2018

Squeezing light at the nanoscale: Ultra-confined light could detect harmful molecules June 17th, 2018

Tripling the Energy Storage of Lithium-Ion Batteries: Scientists have synthesized a new cathode material from iron fluoride that surpasses the capacity limits of traditional lithium-ion batteries June 14th, 2018

Nanomedicine

Camouflaged nanoparticles used to deliver killer protein to cancer June 17th, 2018

Graphene carpets: So neurons communicate better: Research by SISSA reveals that graphene can strengthen neuronal activity, confirming the unique properties of this nanomaterial. The study has been published on Nature Nanotechnology June 13th, 2018

New optical sensor can determine if molecules are left or right 'handed' June 13th, 2018

A nanotech sensor that turns molecular fingerprints into bar codes June 7th, 2018

Discoveries

Carbon nanotube optics poised to provide pathway to optical-based quantum cryptography and quantum computing: Researchers are exploring enhanced potential of carbon nanotubes for unique applications June 18th, 2018

Camouflaged nanoparticles used to deliver killer protein to cancer June 17th, 2018

Squeezing light at the nanoscale: Ultra-confined light could detect harmful molecules June 17th, 2018

Physicists devise method to reveal how light affects materials: The new method adds to the understanding of the fundamental laws governing the interaction of electrons and light June 15th, 2018

Announcements

Carbon nanotube optics poised to provide pathway to optical-based quantum cryptography and quantum computing: Researchers are exploring enhanced potential of carbon nanotubes for unique applications June 18th, 2018

Camouflaged nanoparticles used to deliver killer protein to cancer June 17th, 2018

Squeezing light at the nanoscale: Ultra-confined light could detect harmful molecules June 17th, 2018

Physicists devise method to reveal how light affects materials: The new method adds to the understanding of the fundamental laws governing the interaction of electrons and light June 15th, 2018

Tools

Nanometrics Updates Time of Webcast at Stifel 2018 Cross Sector Insight Conference June 12th, 2018

Nano-saturn: Supramolecular complex formation: Anthracene macrocycle and C60 fullerene June 8th, 2018

Detecting the birth and death of a phonon June 7th, 2018

Scientists use photonic chip to make virtual movies of molecular motion June 6th, 2018

Nanobiotechnology

Camouflaged nanoparticles used to deliver killer protein to cancer June 17th, 2018

Graphene carpets: So neurons communicate better: Research by SISSA reveals that graphene can strengthen neuronal activity, confirming the unique properties of this nanomaterial. The study has been published on Nature Nanotechnology June 13th, 2018

New optical sensor can determine if molecules are left or right 'handed' June 13th, 2018

Promising news from biomedicine: DNA origami more resilient than previously understood June 4th, 2018

Research partnerships

Evidence for a new property of quantum matter revealed: Electrical dipole activity detected in a quantum material unlike any other tested June 11th, 2018

Scientists use photonic chip to make virtual movies of molecular motion June 6th, 2018

Quantum Interference May Be Key to Smaller Insulators: Breakthrough could jumpstart further miniaturization of transistors June 6th, 2018

Tunable diamond string may hold key to quantum memory: A process similar to guitar tuning improves storage time of quantum memory May 24th, 2018

NanoNews-Digest
The latest news from around the world, FREE



  Premium Products
NanoNews-Custom
Only the news you want to read!
 Learn More
NanoStrategies
Full-service, expert consulting
 Learn More











ASP
Nanotechnology Now Featured Books




NNN

The Hunger Project