Nanotechnology Now

Our NanoNews Digest Sponsors

Heifer International

Wikipedia Affiliate Button

Home > Press > Polymer passage takes time

Abstract:
New theory aids researchers studying DNA, protein transport

Polymer passage takes time

Houston, TX | Posted on July 29th, 2010

Polymer strands wriggle their way through nanometer-sized pores in a membrane to get from here to there and do their jobs. New theoretical research by Rice University scientists quantifies precisely how long the journey takes.

That's a good thing to know for scientists studying the transport of RNA, DNA and proteins -- all of which count as polymers -- or those who are developing membranes for use in biosensors or as drug-delivery devices.

Researchers led by Anatoly Kolomeisky, an associate professor of chemistry and of chemical and biomolecular engineering, have come up with a theoretical method to calculate the time it takes for long-chain polymers to translocate through nano-sized channels in membranes, like the one that separates the nucleus of a cell from surrounding cytoplasm. RNA molecules have to make this intracellular trip, as do proteins that pass through a cell's exterior membrane to perform tasks in the body.

Primary author Kolomeisky reported the findings this month in the Journal of Chemical Physics. Study co-authors include Aruna Mohan, a former postdoctoral research associate at Rice and now a researcher at Exxon-Mobil, and Matteo Pasquali, professor in chemical and biomolecular engineering and chemistry.

The team studied the translocation of a long polymer molecule, which roughly resembles beads on a string, through two types of nanopore geometries: a cylinder and a two-cylinder composite that resembled a large tube connected to a small tube. Not surprisingly, they found a polymer passed more quickly when entering the composite through the wide end.

"We assume the polymer is relatively large in comparison with the size of the pore, which is realistic," Kolomeisky said of the process, which is akin to threading a rope through a peephole. "A typical strand of DNA could be a thousand nanometers long, and the pore could have a length of a few nanometers."

It's been known for some time that polymers don't just fly through a pore, even when they find the opening. They start. They stop. They start again. And once the leading end has entered a pore, it can back out. Polymers often jitter backward and forward as they progress through a pore, constantly reconfiguring themselves.

"Previous theorists thought that as soon as the leading end reached the channel, the whole polymer would go through," he said. "We're saying it goes back and forth many times before it finally passes."

The key to an accurate description of polymer translocation with single-molecule precision is measuring electric currents that go through the pore. "When the current is high, there's no polymer in the channel. When the current is down, it's in the pore and blocking the flux," he said.

Experiments indicate typical DNA and RNA molecules could pass through a membrane in a few milliseconds, depending on the strength of the electric field driving them. But even that, he said, is much longer than researchers previously thought.

Kolomeisky said the new method works for pores of any geometry, whether they're straight, conical or made of joined cylinders of different sizes, like the hemolysin biological channel they simulated in their research.

The calculations apply equally to natural or artificial pores, which he said would be important to scientists making membranes for drug delivery, biosensors or water purification processes, or researching new methods for sequencing DNA.

Grants from the Welch Foundation and the National Science Foundation supported the research.

Read the abstract at jcp.aip.org/jcpsa6/v133/i2/p024902_s1

####

For more information, please click here

Contacts:
Mike Williams
PHONE: 713-348-6728

Copyright © Rice University

If you have a comment, please Contact us.

Issuers of news releases, not 7th Wave, Inc. or Nanotechnology Now, are solely responsible for the accuracy of the content.

Bookmark:
Delicious Digg Newsvine Google Yahoo Reddit Magnoliacom Furl Facebook

Related News Press

News and information

Atomic imperfections move quantum communication network closer to reality June 25th, 2017

Research accelerates quest for quicker, longer-lasting electronics: UC Riverside-led research makes topological insulators magnetic well above room temperatures June 25th, 2017

U.S. Air Force Research Lab Taps IBM to Build Brain-Inspired AI Supercomputing System: Equal to 64 million neurons, new neurosynaptic supercomputing system will power complex AI tasks at unprecedented speed and energy efficiency June 23rd, 2017

Rice U. chemists create 3-D printed graphene foam June 22nd, 2017

Academic/Education

Oxford Instruments congratulates Lancaster University for inaugurating the IsoLab, built for studying quantum systems June 20th, 2017

The 2017 Winners for Generation Nano June 8th, 2017

MIT Energy Initiative awards 10 seed fund grants for early-stage energy research May 4th, 2017

Bar-Ilan University to set up quantum research center May 1st, 2017

Nanomedicine

Researchers developed nanoparticle based contrast agent for dual modal imaging of cancer June 21st, 2017

Learning with light: New system allows optical ďdeep learningĒ: Neural networks could be implemented more quickly using new photonic technology June 12th, 2017

Mussels add muscle to biocompatible fibers: Rice University chemists develop hydrogel strings using compound found in sea creatures June 9th, 2017

Making vessels leaky on demand could aid drug delivery:Rice University scientists use magnets and nanoparticles to open, close gaps in blood vessels June 8th, 2017

Sensors

Letiís Autonomous-Vehicle System Embedded in Infineonís AURIX Platform: Letiís Low-Power, Multi-Sensor System that Transforms Distance Data into Clear Information About the Driving Environment Will Be Demonstrated at ITS Meeting in Strasbourg, June 19-22 June 20th, 2017

New diode features optically controlled capacitance: Israeli researchers have developed a new optically tunable capacitor with embedded metal nanoparticles, creating a metal-insulator-semiconductor diode that is tunable by illumination. June 8th, 2017

Graphene and quantum dots put in motion a CMOS-integrated camera that can see the invisible May 29th, 2017

Ag/ZnO-Nanorods Schottky diodes based UV-PDs are fabricated and tested May 26th, 2017

Announcements

Atomic imperfections move quantum communication network closer to reality June 25th, 2017

Research accelerates quest for quicker, longer-lasting electronics: UC Riverside-led research makes topological insulators magnetic well above room temperatures June 25th, 2017

U.S. Air Force Research Lab Taps IBM to Build Brain-Inspired AI Supercomputing System: Equal to 64 million neurons, new neurosynaptic supercomputing system will power complex AI tasks at unprecedented speed and energy efficiency June 23rd, 2017

Rice U. chemists create 3-D printed graphene foam June 22nd, 2017

Grants/Sponsored Research/Awards/Scholarships/Gifts/Contests/Honors/Records

Atomic imperfections move quantum communication network closer to reality June 25th, 2017

Rice U. chemists create 3-D printed graphene foam June 22nd, 2017

Mussels add muscle to biocompatible fibers: Rice University chemists develop hydrogel strings using compound found in sea creatures June 9th, 2017

The 2017 Winners for Generation Nano June 8th, 2017

Nanobiotechnology

Researchers developed nanoparticle based contrast agent for dual modal imaging of cancer June 21st, 2017

Mussels add muscle to biocompatible fibers: Rice University chemists develop hydrogel strings using compound found in sea creatures June 9th, 2017

Making vessels leaky on demand could aid drug delivery:Rice University scientists use magnets and nanoparticles to open, close gaps in blood vessels June 8th, 2017

Nanobiotix's promising data from Phase I/II head and neck cancer trial presented at ASCO June 5th, 2017

NanoNews-Digest
The latest news from around the world, FREE



  Premium Products
NanoNews-Custom
Only the news you want to read!
 Learn More
NanoTech-Transfer
University Technology Transfer & Patents
 Learn More
NanoStrategies
Full-service, expert consulting
 Learn More











ASP
Nanotechnology Now Featured Books




NNN

The Hunger Project