Nanotechnology Now

Our NanoNews Digest Sponsors



Heifer International

Wikipedia Affiliate Button


android tablet pc

Home > Press > Polymer passage takes time

Abstract:
New theory aids researchers studying DNA, protein transport

Polymer passage takes time

Houston, TX | Posted on July 29th, 2010

Polymer strands wriggle their way through nanometer-sized pores in a membrane to get from here to there and do their jobs. New theoretical research by Rice University scientists quantifies precisely how long the journey takes.

That's a good thing to know for scientists studying the transport of RNA, DNA and proteins -- all of which count as polymers -- or those who are developing membranes for use in biosensors or as drug-delivery devices.

Researchers led by Anatoly Kolomeisky, an associate professor of chemistry and of chemical and biomolecular engineering, have come up with a theoretical method to calculate the time it takes for long-chain polymers to translocate through nano-sized channels in membranes, like the one that separates the nucleus of a cell from surrounding cytoplasm. RNA molecules have to make this intracellular trip, as do proteins that pass through a cell's exterior membrane to perform tasks in the body.

Primary author Kolomeisky reported the findings this month in the Journal of Chemical Physics. Study co-authors include Aruna Mohan, a former postdoctoral research associate at Rice and now a researcher at Exxon-Mobil, and Matteo Pasquali, professor in chemical and biomolecular engineering and chemistry.

The team studied the translocation of a long polymer molecule, which roughly resembles beads on a string, through two types of nanopore geometries: a cylinder and a two-cylinder composite that resembled a large tube connected to a small tube. Not surprisingly, they found a polymer passed more quickly when entering the composite through the wide end.

"We assume the polymer is relatively large in comparison with the size of the pore, which is realistic," Kolomeisky said of the process, which is akin to threading a rope through a peephole. "A typical strand of DNA could be a thousand nanometers long, and the pore could have a length of a few nanometers."

It's been known for some time that polymers don't just fly through a pore, even when they find the opening. They start. They stop. They start again. And once the leading end has entered a pore, it can back out. Polymers often jitter backward and forward as they progress through a pore, constantly reconfiguring themselves.

"Previous theorists thought that as soon as the leading end reached the channel, the whole polymer would go through," he said. "We're saying it goes back and forth many times before it finally passes."

The key to an accurate description of polymer translocation with single-molecule precision is measuring electric currents that go through the pore. "When the current is high, there's no polymer in the channel. When the current is down, it's in the pore and blocking the flux," he said.

Experiments indicate typical DNA and RNA molecules could pass through a membrane in a few milliseconds, depending on the strength of the electric field driving them. But even that, he said, is much longer than researchers previously thought.

Kolomeisky said the new method works for pores of any geometry, whether they're straight, conical or made of joined cylinders of different sizes, like the hemolysin biological channel they simulated in their research.

The calculations apply equally to natural or artificial pores, which he said would be important to scientists making membranes for drug delivery, biosensors or water purification processes, or researching new methods for sequencing DNA.

Grants from the Welch Foundation and the National Science Foundation supported the research.

Read the abstract at jcp.aip.org/jcpsa6/v133/i2/p024902_s1

####

For more information, please click here

Contacts:
Mike Williams
PHONE: 713-348-6728

Copyright © Rice University

If you have a comment, please Contact us.

Issuers of news releases, not 7th Wave, Inc. or Nanotechnology Now, are solely responsible for the accuracy of the content.

Bookmark:
Delicious Digg Newsvine Google Yahoo Reddit Magnoliacom Furl Facebook

Related News Press

News and information

Smallest possible diamonds form ultra-thin nanothreads: Diamond nanothreads are likely to have extraordinary properties, including strength and stiffness greater than that of today's strongest nanotubes and polymers September 22nd, 2014

Engineers show light can play seesaw at the nanoscale: Discovery is another step toward faster and more energy-efficient optical devices for computation and communication September 22nd, 2014

New chip promising for tumor-targeting research September 22nd, 2014

Twisted graphene chills out: When two sheets of graphene are stacked in a special way, it is possible to cool down the graphene with a laser instead of heating it up, University of Manchester researchers have shown September 22nd, 2014

Academic/Education

Biosensors Get a Boost from Graphene Partnership: $5 Million Investment Supports Dozens of Jobs and Development of 300mm Fabrication Process and Wafer Transfer Facility September 18th, 2014

Malvern technology delivers Malvern reliability in multi-disciplinary lab at Queen Mary University London September 9th, 2014

State University of New York Trustees Unanimously Approve SUNY Polytechnic Institute (SUNY Poly) as New Name for Merged SUNY CNSE / SUNYIT September 9th, 2014

New Vice President Takes Helm at CNSE CMOST: Catherine Gilbert To Lead CNSE Children’s Museum of Science and Technology Through Expansion And Relocation August 29th, 2014

Nanomedicine

Engineered proteins stick like glue — even in water: New adhesives based on mussel proteins could be useful for naval or medical applications September 22nd, 2014

New chip promising for tumor-targeting research September 22nd, 2014

Arrowhead to Present at BioCentury's NewsMakers in the Biotech Industry Conference September 19th, 2014

The Pocket Project will develop a low-cost and accurate point-of-care test to diagnose Tuberculosis: ICN2 holds a follow-up meeting of the Project on September 18th - 19th September 18th, 2014

Sensors

IEEE International Electron Devices Meeting To Celebrate 60th Anniversary as The Leading Technical Conference for Advanced Semiconductor Devices September 18th, 2014

Biosensors Get a Boost from Graphene Partnership: $5 Million Investment Supports Dozens of Jobs and Development of 300mm Fabrication Process and Wafer Transfer Facility September 18th, 2014

The Pocket Project will develop a low-cost and accurate point-of-care test to diagnose Tuberculosis: ICN2 holds a follow-up meeting of the Project on September 18th - 19th September 18th, 2014

Nanoscience makes your wine better September 17th, 2014

Announcements

Engineers show light can play seesaw at the nanoscale: Discovery is another step toward faster and more energy-efficient optical devices for computation and communication September 22nd, 2014

New chip promising for tumor-targeting research September 22nd, 2014

Twisted graphene chills out: When two sheets of graphene are stacked in a special way, it is possible to cool down the graphene with a laser instead of heating it up, University of Manchester researchers have shown September 22nd, 2014

New star-shaped molecule breakthrough: Scientists at The University of Manchester have generated a new star-shaped molecule made up of interlocking rings, which is the most complex of its kind ever created September 22nd, 2014

Grants/Awards/Scholarships/Gifts/Contests/Honors/Records

New chip promising for tumor-targeting research September 22nd, 2014

SouthWest NanoTechnologies (SWeNT) Receives NIST Small Business Innovation Research (SBIR) Phase 1 Award to Produce Greater than 99% Semiconducting Single-Wall Carbon Nanotubes September 19th, 2014

Big Results Require Big Ambitions: Three young UCSB faculty receive CAREER awards from the National Science Foundation September 18th, 2014

Effective Nanotechnology Innovations to Receive Mustafa Prize September 16th, 2014

Nanobiotechnology

New star-shaped molecule breakthrough: Scientists at The University of Manchester have generated a new star-shaped molecule made up of interlocking rings, which is the most complex of its kind ever created September 22nd, 2014

Arrowhead to Present at BioCentury's NewsMakers in the Biotech Industry Conference September 19th, 2014

CiQUS researchers design an artificial nose to detect DNA differentiation with single nucleotide resolution September 18th, 2014

Biosensors Get a Boost from Graphene Partnership: $5 Million Investment Supports Dozens of Jobs and Development of 300mm Fabrication Process and Wafer Transfer Facility September 18th, 2014

NanoNews-Digest
The latest news from around the world, FREE



  Premium Products
NanoNews-Custom
Only the news you want to read!
 Learn More
NanoTech-Transfer
University Technology Transfer & Patents
 Learn More
NanoStrategies
Full-service, expert consulting
 Learn More














ASP
Nanotechnology Now Featured Books




NNN

The Hunger Project







© Copyright 1999-2014 7th Wave, Inc. All Rights Reserved PRIVACY POLICY :: CONTACT US :: STATS :: SITE MAP :: ADVERTISE